ft::QKMap Class Reference

A class that contains the map between queries and kmers.

#include <qkMapClass.h>

Public Member Functions
	QKMap ()
	Constructor.
virtual	~QKMap ()
	Destructor.
const std::map< ft::QIdT, std::set< std::string > > &	getQKMap ()
	retrieve the qkmap More...
std::set< ft::QIdT >	retrieveQueries (const ft::KmerClass &kmer)
	Access functions for _qkMap. More...
std::set< std::string >	retrieveKmers (const ft::QIdT &queryIDT)
	retrieve kmers that map to a specific query ID and type More...
bool	checkForMatch (const ft::QueryClass &query, const ft::KmerClass &kmer) const
	see if a query contains a kmer More...
bool	checkForQuery (const ft::QueryClass &query) const
	see if a query is in the qkMap More...
void	addQKPair (const ft::QIdT &qIDT, const std::string &kmer)
	add a query ID, Type and Kmer pair to the QKMap More...

Public Attributes
std::map< ft::QIdT, std::set< std::string > >	_map

Member Function Documentation

addQKPair()

void ft::QKMap::addQKPair	(	const ft::QIdT &	qIDT,
		const std::string &	kmer
	)

Parameters

ft::KmerClass	kmer
ft::QIdT	(query ID, query Type)

checkForMatch()

bool ft::QKMap::checkForMatch	(	const ft::QueryClass &	query,
		const ft::KmerClass &	kmer
	)		const

Parameters

ft::KmerClass	kmer
ft::QueryClass	query

checkForQuery()

bool ft::QKMap::checkForQuery

(

const ft::QueryClass &

query

)

const

Parameters

ft::QueryClass

query

getQKMap()

const std::map<ft::QIdT, std::set<std::string> >& ft::QKMap::getQKMap

(

)

Returns

_map

retrieveKmers()

std::set< std::string > ft::QKMap::retrieveKmers

(

const ft::QIdT &

queryIDT

)

Parameters

ft::QIdT

Returns

set of kmer strings

retrieveQueries()

std::set< ft::QIdT > ft::QKMap::retrieveQueries

(

const ft::KmerClass &

kmer

)

Functions

retrieve queries that map to a specific Kmer

Parameters

ft::KmerClass

kmer

Returns

set of query Ids

Member Data Documentation

_map

ft::QKMap::_map

map between queries and sets of kmers

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The documentation for this class was generated from the following files:

• flextyper/includes/qkMapClass.h
• flextyper/src/qkMapClass.cpp