A class that contains information for one query ID, Type pair.

#include <queryClass.h>

Public Member Functions
	QueryClass (int queryID, ft::QueryType queryType)

virtual	~QueryClass ()
	Class Destructor.

Getters
Constant functions to return properties of the query
int	getqID () const

QueryType	getqType () const

std::string	getQueryString () const

int	getCount () const

std::map< ft::FlagType, std::set< std::string > >	getQFlags () const

ft::QIdT	getQIdT () const

const std::set< std::string >	getFlagKmers (const ft::FlagType flag) const

const std::set< ft::ReadID > &	getReadIDs () const

Setters
Non-constant functions to update properties of the query class
void	setQueryString (std::string queryString)

void	setCount (int count)

void	setFlags (const std::map< ft::FlagType, std::set< std::string >> &qFlags)

Adders
Non-constant functions to add properties to the query class
void	addFlags (const ft::FlagType &flagType, const std::set< std::string > &kmers)

void	addFlag (const ft::FlagType &flagType, const std::string &kmer)

void	addReadID (const ft::ReadID &readID)

Removers
Non-constant functions to remove properties from the query class
void	removeFlag (ft::FlagType flagType)

void	removeKmerFlag (const ft::FlagType &flagTyper, const std::string &kmers)

void	removeCount ()

void	removeReadID (const ft::ReadID &readID)

Checkers
Constant functions to check the properties of the query class
bool	isQIdTEqual (const ft::QIdT &test) const

bool	hasQueryID (const int &qid) const

bool	hasQueryType (const ft::QueryType &qType) const

bool	hasFlag (const ft::FlagType &flag) const

bool	hasKmerFlag (const ft::FlagType &flag, const std::string &kmer) const

bool	hasNonZeroCount () const

bool	hasReadID (const ft::ReadID &readID) const

Overloaded Operators
Constant functions that define how to compare two query classes for equality
bool	operator< (const ft::QueryClass &q) const

bool	operator== (const ft::QueryClass &q) const

Public Attributes
Properties
int	_qID

QueryType	_qType

std::string	_qstring

int	_count

std::map< ft::FlagType, std::set< std::string > >	_qFlags

std::set< ft::ReadID >	_reads

Constructor & Destructor Documentation

◆ QueryClass()

ft::QueryClass::QueryClass	(	int	queryID,
		ft::QueryType	queryType
	)

Constructor

Parameters

int	query ID as an integer
ft::QueryType	query type {REF, ALT, CRO}

The documentation for this class was generated from the following files:

flextyper/includes/queryClass.h
flextyper/src/queryClass.cpp

Public Member Functions

Public Attributes

Constructor & Destructor Documentation

◆ QueryClass()