qkMapClass.h

#ifndef QKMAPCLASS_H
#define QKMAPCLASS_H
 
#include <set>
#include <iostream>
#include <unordered_map>
#include <future>
#include <vector>
#include "kmerClass.h"
#include "queryClass.h"
 
namespace ft {
 
 
class QKMap
{
public:
    QKMap();
    virtual ~QKMap();
 
    std::map<ft::QIdT, std::set<std::string>> _map;
 
    const std::map<ft::QIdT, std::set<std::string>>& getQKMap();
 
 
 
    std::set<ft::QIdT> retrieveQueries(const ft::KmerClass& kmer);
 
    std::set<std::string> retrieveKmers(const ft::QIdT& queryIDT);
 
    bool checkForMatch(const ft::QueryClass& query, const ft::KmerClass &kmer) const;
 
    bool checkForQuery(const ft::QueryClass& query) const;
 
    void addQKPair(const ft::QIdT& qIDT, const std::string& kmer);
 
private:
 
};
}
#endif // QKMAPCLASS_H