A class that handles the main search functions.

#include <finder.h>

Inherits ft::IFinder.

Public Member Functions
	Finder ()
	Constructor.

virtual	~Finder ()
	Destructor.

void	searchIndexes (ft::FTMap &ftMap)
	Main search function based on the parameters set in FTMap. More...

void	parallelSearch (FTMap &ftMap, const fs::path &indexPath, long long offset)
	parallelSearch searches kmers in parallel in a single index. More...

void	sequentialSearch (ft::FTMap &ftMap, const fs::path &indexPath, long long offset)
	sequentialSearch searches kmers sequentially in a single index. More...

Private Member Functions
void	addResultsFutures (std::map< std::string, ft::KmerClass > &indexResults, ft::KmerClass &tmpResult, uint offset)
	add results from an index to FTMap

void	indexParallelSearch (ft::FTMap &ftMap)
	indexParallelSearch searches across all indexes in parallel

void	indexSequentialSearch (ft::FTMap &ftMap)
	indexSequentialSearch searches across all indexes sequentially

void	testIndex (const FTProp &ftProps, algo::IFmIndex *fmIndex, const fs::path &indexPath, std::string &testkmer)

Member Function Documentation

◆ parallelSearch()

void ft::Finder::parallelSearch	(	FTMap &	ftMap,
		const fs::path &	indexPath,
		long long	offset
	)

Parallel Search parallelSearch will search each kmer in parallel across a single index using asynchronous programming

Parameters

FTMap	The search class containing parameters and results
indexPath	the index to search
offset	the position offset of the index

void ft::Finder::searchIndexes ( ft::FTMap & ftMap )

Search Indexes

Parameters

ft::FTMap ftMap containing all the search properties

void ft::Finder::sequentialSearch	(	ft::FTMap &	ftMap,
		const fs::path &	indexPath,
		long long	offset
	)

Sequential Search

Parameters

FTMap	The search class containing parameters and results
indexPath	the index to search
offset	the position offset of the index

The documentation for this class was generated from the following files: