finder.h

#ifndef __FINDER_H__
#define __FINDER_H__
 
#include <experimental/filesystem>
#include "fmindex.h"
#include "ifmindex.h"
#include <algorithm>
#include "ifinder.h"
 
namespace ft {
 
namespace fs = std::experimental::filesystem;
 
class Finder : public IFinder
{
public:
    Finder();
    Finder(const Finder& other) = delete;
 
    virtual ~Finder();
    const Finder& operator=(const Finder &other) = delete;
 
    void searchIndexes(ft::FTMap &ftMap);
 
    void parallelSearch(FTMap &ftMap,
                        const fs::path &indexPath, long long offset);
 
    void sequentialSearch(ft::FTMap &ftMap,
                          const fs::path &indexPath,long long offset);
 
private:
 
    void addResultsFutures(std::map<std::string, ft::KmerClass> & indexResults, ft::KmerClass &tmpResult, uint offset);
 
    void indexParallelSearch(ft::FTMap &ftMap);
 
    void indexSequentialSearch(ft::FTMap &ftMap);
 
    void testIndex(const FTProp& ftProps, algo::IFmIndex* fmIndex, const fs::path &indexPath, std::string &testkmer);
};
}
 
#endif // end of Finder class